Merge branch 'develop' into documentation

.github/workflows/flake8.yml

@@ -21,6 +21,6 @@ jobs:
       - name: flake8 Lint
         uses: py-actions/flake8@v1
         with:
-          ignore: "E501,E722"
+          ignore: "E501"
           exclude: "__init__.py, input/__init__.py"
           path: "pyerrors"

CONTRIBUTING.md

@@ -30,6 +30,6 @@ pytest --cov=pyerrors --cov-report html
 ```
 The linter `flake8` is executed with the command
 ```
-flake8 --ignore=E501,E722 --exclude=__init__.py pyerrors
+flake8 --ignore=E501 --exclude=__init__.py pyerrors
 ```
 Please make sure that all tests are passed for a new pull requests.

pyerrors/correlators.py

@@ -536,7 +536,7 @@ class Corr:
                     y_min = min([(x[0].value - x[0].dvalue) for x in self.content[x_range[0]: x_range[1] + 1] if (x is not None) and x[0].dvalue < 2 * np.abs(x[0].value)])
                     y_max = max([(x[0].value + x[0].dvalue) for x in self.content[x_range[0]: x_range[1] + 1] if (x is not None) and x[0].dvalue < 2 * np.abs(x[0].value)])
                     ax1.set_ylim([y_min - 0.1 * (y_max - y_min), y_max + 0.1 * (y_max - y_min)])
-                except:
+                except Exception:
                     pass
             else:
                 ax1.set_ylim(y_range)

pyerrors/fits.py

@@ -187,7 +187,7 @@ def total_least_squares(x, y, func, silent=False, **kwargs):
     for i in range(25):
         try:
             func(np.arange(i), x.T[0])
-        except:
+        except Exception:
             pass
         else:
             break
@@ -328,7 +328,7 @@ def _prior_fit(x, y, func, priors, silent=False, **kwargs):
     for i in range(100):
         try:
             func(np.arange(i), 0)
-        except:
+        except Exception:
             pass
         else:
             break
@@ -469,7 +469,7 @@ def _standard_fit(x, y, func, silent=False, **kwargs):
     for i in range(25):
         try:
             func(np.arange(i), x.T[0])
-        except:
+        except Exception:
             pass
         else:
             break

pyerrors/input/bdio.py

@@ -226,7 +226,7 @@ def write_ADerrors(obs_list, file_path, bdio_path='./libbdio.so', **kwargs):
         for key in keys:
             try:  # Try to convert key to integer
                 ids.append(int(key))
-            except:  # If not possible construct a hash
+            except Exception:  # If not possible construct a hash
                 ids.append(int(hashlib.sha256(key.encode('utf-8')).hexdigest(), 16) % 10 ** 8)
         print('ids', ids)
         nt = []

pyerrors/obs.py

@@ -946,7 +946,7 @@ def _merge_idx(idl):
         g = groupby(idl)
         if next(g, True) and not next(g, False):
             return idl[0]
-    except:
+    except Exception:
         pass
 
     if np.all([type(idx) is range for idx in idl]):