test/more #9
8 changed files with 225 additions and 16 deletions
ruff compatible to YTT,E,W,F
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commit
d137f67e10
GPG key ID:
00ED992DD79B85A6
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@ -1,5 +1,5 @@
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"""
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The aim of this project is to extend pyerrors to be able to collect measurements from different projects and make them easily accessable to
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The aim of this project is to extend pyerrors to be able to collect measurements from different projects and make them easily accessable to
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the research group. The idea is to build a database, in which the researcher can easily search for measurements on a correlator basis,
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which may be reusable.
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As a standard to store the measurements, we will use the .json.gz format from pyerrors.
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@ -15,8 +15,10 @@ For now, we are interested in collecting primary IObservables only, as these are
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__app_name__ = "corrlib"
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from .main import *
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from .import input as input
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from .initialization import *
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from .meas_io import *
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from .find import *
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from .initialization import create as create
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from .meas_io import load_record as load_record
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from .meas_io import load_records as load_records
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from .find import find_project as find_project
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from .find import find_record as find_record
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from .find import list_projects as list_projects
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@ -15,7 +15,7 @@ def _project_lookup_by_alias(db, alias):
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c.execute(f"SELECT * FROM 'projects' WHERE alias = '{alias}'")
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results = c.fetchall()
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conn.close()
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if len(results) > 1:
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if len(results)>1:
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print("Error: multiple projects found with alias " + alias)
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elif len(results) == 0:
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raise Exception("Error: no project found with alias " + alias)
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@ -130,14 +130,14 @@ def import_project(path: str, url: str, owner: Union[str, None]=None, tags: Unio
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dl.save([db, path + '/projects/' + uuid], message="Import project from " + url, dataset=path)
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else:
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dl.drop(tmp_path, reckless='kill')
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shutil.rmtree(tmp_path)
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shutil.rmtree(tmp_path)
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if aliases is not None:
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if isinstance(aliases, str):
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alias_list = [aliases]
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else:
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alias_list = aliases
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update_aliases(path, uuid, alias_list)
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# make this more concrete
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return uuid
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@ -58,7 +58,7 @@ def write_measurement(path, ensemble, measurement, uuid, code, parameter_file=No
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pars = {}
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subkeys = []
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for i in range(len(parameters["rw_fcts"])):
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par_list = []
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par_list = []
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for k in parameters["rw_fcts"][i].keys():
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par_list.append(str(parameters["rw_fcts"][i][k]))
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subkey = "/".join(par_list)
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@ -79,12 +79,12 @@ def write_measurement(path, ensemble, measurement, uuid, code, parameter_file=No
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subkey = "/".join(par_list)
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subkeys = [subkey]
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pars[subkey] = json.dumps(parameters)
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for subkey in subkeys:
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for subkey in subkeys:
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parHash = sha256(str(pars[subkey]).encode('UTF-8')).hexdigest()
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meas_path = file_in_archive + "::" + parHash
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known_meas[parHash] = measurement[corr][subkey]
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if c.execute("SELECT * FROM backlogs WHERE path = ?", (meas_path,)).fetchone() is not None:
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c.execute("UPDATE backlogs SET updated_at = datetime('now') WHERE path = ?", (meas_path, ))
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else:
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@ -107,7 +107,7 @@ def load_record(path: str, meas_path: str):
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Path of the correlator library.
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meas_path: str
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The path to the correlator in the backlog system.
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Returns
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-------
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co : Corr or Obs
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@ -126,7 +126,7 @@ def load_records(path: str, meas_paths: list[str], preloaded = {}) -> list[Union
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Path of the correlator library.
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meas_paths: list[str]
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A list of the paths to the correlator in the backlog system.
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Returns
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-------
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List
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@ -26,4 +26,3 @@ def get_file(path: str, file: str):
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print("Downloading data...")
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dl.get(os.path.join(path, file), dataset=path)
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print("> downloaded file")
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@ -1 +1,34 @@
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__version__ = "0.2.3"
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# file generated by setuptools-scm
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# don't change, don't track in version control
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__all__ = [
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"__version__",
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"__version_tuple__",
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"version",
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"version_tuple",
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"__commit_id__",
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"commit_id",
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]
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TYPE_CHECKING = False
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if TYPE_CHECKING:
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from typing import Tuple
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from typing import Union
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VERSION_TUPLE = Tuple[Union[int, str], ...]
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COMMIT_ID = Union[str, None]
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else:
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VERSION_TUPLE = object
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COMMIT_ID = object
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version: str
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__version__: str
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__version_tuple__: VERSION_TUPLE
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version_tuple: VERSION_TUPLE
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commit_id: COMMIT_ID
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__commit_id__: COMMIT_ID
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__version__ = version = '0.2.4.dev14+g602324f84.d20251202'
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__version_tuple__ = version_tuple = (0, 2, 4, 'dev14', 'g602324f84.d20251202')
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__commit_id__ = commit_id = 'g602324f84'
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@ -27,11 +27,19 @@ include = ["corrlib", "corrlib.*"]
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write_to = "corrlib/version.py"
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[tool.ruff.lint]
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ignore = ["F403"]
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ignore = ["E501"]
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extend-select = [
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"YTT",
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"E",
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"W",
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"F",
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]
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[dependency-groups]
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dev = [
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"mypy>=1.19.0",
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"pytest>=9.0.1",
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"pytest-cov>=7.0.0",
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"pytest-pretty>=1.3.0",
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"ruff>=0.14.7",
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]
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167
uv.lock
generated
167
uv.lock
generated
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@ -415,9 +415,11 @@ dependencies = [
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[package.dev-dependencies]
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dev = [
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{ name = "mypy" },
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{ name = "pytest" },
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{ name = "pytest-cov" },
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{ name = "pytest-pretty" },
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{ name = "ruff" },
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]
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[package.metadata]
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@ -430,9 +432,11 @@ requires-dist = [
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[package.metadata.requires-dev]
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dev = [
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{ name = "mypy", specifier = ">=1.19.0" },
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{ name = "pytest", specifier = ">=9.0.1" },
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{ name = "pytest-cov", specifier = ">=7.0.0" },
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{ name = "pytest-pretty", specifier = ">=1.3.0" },
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{ name = "ruff", specifier = ">=0.14.7" },
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]
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[[package]]
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@ -1105,6 +1109,79 @@ wheels = [
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]
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[[package]]
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name = "librt"
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wheels = [
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||||
]
|
||||
|
||||
[[package]]
|
||||
name = "s3transfer"
|
||||
version = "0.16.0"
|
||||
|
|
|
|||
Loading…
Add table
Add a link
Reference in a new issue