remove temporary non-datalad implementation

corrlib/main.py

@@ -6,7 +6,7 @@ from .git_tools import move_submodule
 import shutil
 from .find import _project_lookup_by_id
 from .tools import list2str, str2list, get_db_file
-from .tracker import get, save
+from .tracker import get, save, unlock, init, clone, drop
 from typing import Union, Optional
 
 
@@ -34,7 +34,7 @@ def create_project(path: str, uuid: str, owner: Union[str, None]=None, tags: Uni
     if known_projects.fetchone():
         raise ValueError("Project already imported, use update_project() instead.")
 
-    dl.unlock(db, dataset=path)
+    unlock(path, db_file)
     alias_str = ""
     if aliases is not None:
         alias_str = list2str(aliases)
@@ -80,7 +80,7 @@ def update_aliases(path: str, uuid: str, aliases: list[str]) -> None:
 
     if not len(new_alias_list) == len(known_alias_list):
         alias_str = list2str(new_alias_list)
-        dl.unlock(db, dataset=path)
+        unlock(path, db_file)
         update_project_data(path, uuid, "aliases", alias_str)
         save(path, message="Updated aliases for project " + uuid, files=[db_file])
     return
@@ -113,12 +113,7 @@ def import_project(path: str, url: str, owner: Union[str, None]=None, tags: Opti
 
     """
     tmp_path = os.path.join(path, 'projects/tmp')
-    if not isDataset:
-        dl.create(tmp_path, dataset=path)
-        shutil.copytree(url + "/*", path + '/projects/tmp/')
-        save(path, message="Created temporary project dataset", files=['projects/tmp'])
-    else:
-        dl.install(path=tmp_path, source=url, dataset=path)
+    clone(path, source=url, target=tmp_path)
     tmp_ds = dl.Dataset(tmp_path)
     conf = dlc.ConfigManager(tmp_ds)
     uuid = str(conf.get("datalad.dataset.id"))
@@ -126,9 +121,8 @@ def import_project(path: str, url: str, owner: Union[str, None]=None, tags: Opti
         raise ValueError("The dataset does not have a uuid!")
     if not os.path.exists(path + "/projects/" + uuid):
         db_file = get_db_file(path)
-        db = os.path.join(path, db_file)
         get(path, db_file)
-        dl.unlock(db, dataset=path)
+        unlock(path, db_file)
         create_project(path, uuid, owner, tags, aliases, code)
         move_submodule(path, 'projects/tmp', 'projects/' + uuid)
         os.mkdir(path + '/import_scripts/' + uuid)
@@ -151,6 +145,6 @@ def drop_project_data(path: str, uuid: str, path_in_project: str = "") -> None:
     """
     Drop (parts of) a project to free up diskspace
     """
-    dl.drop(path + "/projects/" + uuid + "/" + path_in_project)
+    drop(path + "/projects/" + uuid + "/" + path_in_project)
     return
 

corrlib/tracker.py

@@ -1,7 +1,9 @@
 import os
 from configparser import ConfigParser
-from .trackers import datalad as dl
+import datalad.api as dl
 from typing import Optional
+import shutil
+from .tools import get_db_file
 
 
 def get_tracker(path: str) -> str:
@@ -18,7 +20,12 @@ def get_tracker(path: str) -> str:
 def get(path: str, file: str) -> None:
     tracker = get_tracker(path)
     if tracker == 'datalad':
-        dl.get(path, file)
+        if file == get_db_file(path):
+            print("Downloading database...")
+        else:
+            print("Downloading data...")
+        dl.get(os.path.join(path, file), dataset=path)
+        print("> downloaded file")
     elif tracker == 'None':
         pass
     else:
@@ -29,7 +36,9 @@ def get(path: str, file: str) -> None:
 def save(path: str, message: str, files: Optional[list[str]]=None) -> None:
     tracker = get_tracker(path)
     if tracker == 'datalad':
-        dl.save(path, message, files)
+        if files is not None:
+            files = [os.path.join(path, f) for f in files]
+        dl.save(files, message=message, dataset=path)
     elif tracker == 'None':
         pass
     else:
@@ -44,3 +53,38 @@ def init(path: str, tracker: str='datalad') -> None:
     else:
         raise ValueError(f"Tracker {tracker} is not supported.")
     return
+
+
+def unlock(path: str, file: str) -> None:
+    tracker = get_tracker(path)
+    if tracker == 'datalad':
+        dl.unlock(file, dataset=path)
+    elif tracker == 'None':
+        pass
+    else:
+        raise ValueError(f"Tracker {tracker} is not supported.")
+    return
+
+
+def clone(path: str, source: str, target: str) -> None:
+    tracker = get_tracker(path)
+    if tracker == 'datalad':
+        dl.clone(target=target, source=source, dataset=path)
+    elif tracker == 'None':
+        os.makedirs(path, exist_ok=True)
+        # Implement a simple clone by copying files
+        shutil.copytree(source, target, dirs_exist_ok=False)
+    else:
+        raise ValueError(f"Tracker {tracker} is not supported.")
+    return
+
+
+def drop(path: str, reckless: Optional[str]=None) -> None:
+    tracker = get_tracker(path)
+    if tracker == 'datalad':
+        dl.drop(path, reckless=reckless)
+    elif tracker == 'None':
+        shutil.rmtree(path)
+    else:
+        raise ValueError(f"Tracker {tracker} is not supported.")
+    return

corrlib/trackers/datalad.py

@@ -1,25 +0,0 @@
-import datalad.api as dl
-import os
-from typing import Optional
-
-
-def get(path: str, file: str) -> None:
-    if file == "backlogger.db":
-        print("Downloading database...")
-    else:
-        print("Downloading data...")
-    dl.get(os.path.join(path, file), dataset=path)
-    print("> downloaded file")
-    return
-
-
-def save(path: str, message: str, files: Optional[list[str]]=None) -> None:
-    if files is not None:
-        files = [os.path.join(path, f) for f in files]
-    dl.save(files, message=message, dataset=path)
-    return
-
-
-def create(path: str) -> None:
-    dl.create(path)
-    return